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Debarun Acharya

R E S E A R C H A R E A S

Molecular ecology and Microbiome analysis using environmental and clinical data
Genome and metagenome assembly, annotation and analysis
Protein-interaction networks in host-pathogen interaction and coevolution
Comparative genomics and molecular Evolution
Gene and Genome duplication and their relevance on evolution
Role of protein intrinsic disorder on gene expression and host-pathogen interaction
Effect of codon usage bias on mRNA structure, gene expression and protein folding

Ph.D. awarded: 2018, from University of Calcutta, Kolkata, India

Thesis Title

The Importance of Human Duplicated Genes: Insights from Evolutionary Perspective

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R E S E A R C H P U B L I C A T I O N S ( I N T E R N A T I O N A L )

2024

Rinita Dhar, Suman Basu, Mousumi Bhattacharyya, Debarun Acharya, Tapan K. Dutta* (2024) Bacterial catabolism of estrogenic phthalates used in the manufacture of plastic products. Microbial Biotechnnology 17 (11), e70055

2023

Megha Chakraborty, Debarun Acharya, Tapan K. Dutta* (2023) Diversity analysis of hilsa (Tenualosa ilisha) gut microbiota using culture-dependent and culture-independent approaches. Journal of Applied Microbiology 134 (9), lxad208.

2022

Dola Mukherjee, Deeya Saha, Debarun Acharya, Ashutosh Mukherjee, Tapash Chandra Ghosh (2022) Interplay between gene expression and gene architecture as a consequence of gene and genome duplications: evidence from metabolic genes of Arabidopsis thaliana. Physiology and Molecular Biology of Plants 28:1091–1108 (2022).

2021

Debarun Acharya Tapan K. Dutta (2021) Elucidating the network features and evolutionary attributes of intra- and interspecific protein–protein interactions between human and pathogenic bacteria. Scientific Reports 11, DOI:10.1038/s41598-020-80549-x.

2020

Manish Prakash Victor, Debarun Acharya, Sandip Chakraborty, Tapash Chandra Ghosh (2020) The combined influence of codon composition and tRNA copy number regulates translational efficiency by influencing synonymous nucleotide substitution. Gene 745 (2020): 144640. DOI:10.1016/j.gene.2020.144640

Manish Prakash Victor, Debarun Acharya, Sandip Chakraborty, Tapash Chandra Ghosh (2020) Chaperone client proteins evolve slower than non-client proteins. Functional & Integrative Genomics 20: 621–631(2020). DOI: https://doi.org/10.1007/s10142-020-00740-1.

2019

Manish Prakash Victor, Debarun Acharya, Tina Begum, Tapash Chandra Ghosh (2019) The optimization of mRNA expression level by its intrinsic properties — insights from codon usage pattern and structural stability of mRNA. Genomics 111(6)/2019:1292-1297.

2018

Kakali Biswas, Debarun Acharya, Soumita Podder, Tapash Chandra Ghosh (2018) Evolutionary rate heterogeneity between multi- and single-interface hubs across human housekeeping and tissue-specific protein interaction network: insights from proteins' and its partners' properties. Genomics 110(5)/2018: 283-290.

Dola Mukherjee, Deeya Saha, Debarun Acharya, Ashutosh Mukherjee, Sandip Chakraborty, Tapash Chandra Ghosh (2018) The role of introns in the conservation of the metabolic genes of Arabidopsis thaliana. Genomics 110/2018: 310-317.

2017

Arup Panda, Debarun Acharya, Tapash Chandra Ghosh (2017) Insights into human intrinsically disordered proteins from their gene expression profile. Molecular BioSystems 13(12) 2521-2530; DOI: 10.1039/C7MB00311K.

2016

Debarun Acharya, Tapash Chandra Ghosh* (2016) Global analysis of human duplicated genes reveals the relative importance of whole-genome duplicates originated in the early vertebrate evolution. BMC Genomics 12/2016; 17(1). DOI:10.1186/s12864-016- 2392-0.

2015

Debarun Acharya, Dola Mukherjee, Soumita Podder, Tapash Chandra Ghosh* (2015) Investigating different duplication pattern of essential genes in mouse and human. PLoS ONE 03/2015; 10(3). DOI:10.1371/journal.pone.0120784.

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